RuleBender

RuleBender is a useful application that was created in order to help scientists build, simulate, debug and analyze the data for the biological models.

The software uses the BioNetGen language for all the model generation, simulation and Analysis.

Modern biological experiments generate large amounts of data describing intracellular dynamics.

Rule-based languages for describing intracellular biochemistry allow for the construction and simulation of detailed models with unprecedented scope and precision. Rule-based Models can be used to suggest new hypotheses and new ideas for future experimentation.

Rule-based models can be difficult to understand and time consuming to debug.

RuleBender is a free tool for constructing, debugging, simulating and analyzing rule-based biological models in the BioNetGen language.

Features:

Model Construction and Simulation

Model Visualization: Interactive Contact Map

Model Visualization: Interactive Influence Graph

Results Analysis

Species Graph